Consider this a math/strategy/social problem, possibly tougher than any game of chess.
Basically, eBay has a monopoly and they are abusing that fact. Is it possible to neutralize the network effects that protect them?
If any group can come up with a viable strategy, why not news.yc?
They are certainly speeding the process along with their mistreatment of the most important kinds of sellers and allowing the rampant spam and fraud that has nearly taken over whole sections.
When ebay began the web was a very different place. The rise of social networking and basic online shopping awareness will allow smaller niche markets like etsy to flourish. A reputation system that is portable, secure and inter-operates easily would be a big plus in this direction but I think it will happen even without it being fully developed.
I can't wait for an online market of makers that can offer unique, one-off technology products. I'd gladly trade in my Ipod for a funky handmade OS Ogg player that did more of what I want and less of what Apple wants. Reputation built by how many cool things you've made, commissioned items.. Hey there's a startup in there somewhere!